This training session is organized by the Genotoul-Bioinfo platform. This 2 days long course is dedicated to the construction and the analysis of eukaryotic pangenome graphs.

We will first present the concept of graph-based pangenome, then build one. We will then apply several tools for its analysis: use annotation, call variants, extract sub-graphs, visualize the graph, map reads, genotype individuals, and perform a GWAS on the graph. The different formats will also be presented.

By the end of the course, trainees will be familiar with the topic, and able to run the major tools made to build an exploit a pangenome graph.